Retrieve Genes Included For a Specified Panel ID

Usage

get_gene_panel(panel_id = NULL, base_url = NULL)

Arguments

panel_id: name of panel. See available_gene_panels() to get panel ID
base_url: The database URL to query. If NULL will default to URL set with set_cbioportal_db(<your_db>)

Value

A dataframe of genes in a specified panel

Examples

# \dontrun{
get_gene_panel(panel_id = "IMPACT468", base_url = 'www.cbioportal.org/api')
#> # A tibble: 469 × 4
#>    genePanelId entrezGeneId hugoGeneSymbol description                          
#>    <chr>              <int> <chr>          <chr>                                
#>  1 IMPACT468             25 ABL1           Targeted (468 cancer genes) sequenci…
#>  2 IMPACT468          84142 ABRAXAS1       Targeted (468 cancer genes) sequenci…
#>  3 IMPACT468             90 ACVR1          Targeted (468 cancer genes) sequenci…
#>  4 IMPACT468          27161 AGO2           Targeted (468 cancer genes) sequenci…
#>  5 IMPACT468            207 AKT1           Targeted (468 cancer genes) sequenci…
#>  6 IMPACT468            208 AKT2           Targeted (468 cancer genes) sequenci…
#>  7 IMPACT468          10000 AKT3           Targeted (468 cancer genes) sequenci…
#>  8 IMPACT468            238 ALK            Targeted (468 cancer genes) sequenci…
#>  9 IMPACT468            242 ALOX12B        Targeted (468 cancer genes) sequenci…
#> 10 IMPACT468         139285 AMER1          Targeted (468 cancer genes) sequenci…
#> # ℹ 459 more rows
# }